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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00056.1_g00042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 183aa MW: 21553.1 Da PI: 7.8437 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.8 | 1.4e-14 | 72 | 133 | 2 | 63 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e +rerr+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + +e+ Rsa1.0_00056.1_g00042.1 72 PEERRERRMVSNRESARRSRMRKKKQIEELQQQVEQLMILNHNLSEKVINLLESNHQILQEN 133 5779*******************************************999999988888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-14 | 71 | 135 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-13 | 73 | 133 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.438 | 73 | 136 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.75E-11 | 75 | 127 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-11 | 75 | 131 | No hit | No description |
CDD | cd14702 | 1.13E-15 | 76 | 127 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 78 | 93 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MESSPHRSHH CFDILEGMPP QDDHFNSSSL QNPSFHVHLQ SLSSNLPTRS NNNRYHLNPN 60 GETFCHRESF DPEERRERRM VSNRESARRS RMRKKKQIEE LQQQVEQLMI LNHNLSEKVI 120 NLLESNHQIL QENSQLKEKV NSFHLLMAEM LIPMRNVDGS ISDREVNHLR GETSNRTNTF 180 FGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111959.1 | 1e-115 | PREDICTED: basic leucine zipper 25-like | ||||
TrEMBL | M4F4F7 | 1e-115 | M4F4F7_BRARP; Uncharacterized protein | ||||
TrEMBL | A0A078FVP2 | 1e-115 | A0A078FVP2_BRANA; BnaA09g05450D protein | ||||
STRING | Bra035957.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6185 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60830.1 | 8e-69 | basic leucine-zipper 70 |